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1.
NPJ Comput Mater ; 10(1): 73, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38751828

RESUMEN

Why are materials with specific characteristics more abundant than others? This is a fundamental question in materials science and one that is traditionally difficult to tackle, given the vastness of compositional and configurational space. We highlight here the anomalous abundance of inorganic compounds whose primitive unit cell contains a number of atoms that is a multiple of four. This occurrence-named here the rule of four-has to our knowledge not previously been reported or studied. Here, we first highlight the rule's existence, especially notable when restricting oneself to experimentally known compounds, and explore its possible relationship with established descriptors of crystal structures, from symmetries to energies. We then investigate this relative abundance by looking at structural descriptors, both of global (packing configurations) and local (the smooth overlap of atomic positions) nature. Contrary to intuition, the overabundance does not correlate with low-energy or high-symmetry structures; in fact, structures which obey the rule of four are characterized by low symmetries and loosely packed arrangements maximizing the free volume. We are able to correlate this abundance with local structural symmetries, and visualize the results using a hybrid supervised-unsupervised machine learning method.

2.
Nanoscale ; 13(11): 5857-5867, 2021 Mar 21.
Artículo en Inglés | MEDLINE | ID: mdl-33720246

RESUMEN

We investigate the impact of the formation process of Cu nanoparticles on the distribution of adsorption sites and hence on their activity. Using molecular dynamics, we model formation pathways characteristic of physical synthesis routes as the annealing of a liquid droplet, the growth proceeding via the addition of single atoms, and the coalescence of individual nanoparticles. Each formation process leads to different and characteristic size-dependent distributions of their adsorption sites, catalogued and monitored on-the-fly by means of a suitable geometrical descriptor. Annealed or coalesced nanoparticles present a rather homogeneous distribution in the kind and relative abundance of non-equivalent adsorption sites. Atom-by-atom grown nanoparticles, instead, exhibit a more marked occurrence of adsorption sites corresponding to adatoms and small islands on (111) and (100) facets. Regardless of the formation process, highly coordinated sites are more likely in larger nanoparticles, while the abundance of low-coordination sites depends on the formation process and on the nanoparticle size. Furthermore, we show how each characteristic distribution of adsorption sites reflects in different size trends for the Cu-nanoparticle activity, taking as an example the electro-reduction of CO2 into CH4. To this end, we employ a multi-scale method and observe that the faceted but highly defected structures obtained during the atom-by-atom growth become more and more active with increasing size, with a mild dependence on the original seed. In contrast, the activity of Cu-nanoparticles obtained by annealing decreases with their size, while coalesced nanoparticles' activity shows a non-monotonic behaviour.

3.
Phys Chem Chem Phys ; 21(19): 9845-9857, 2019 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-31032510

RESUMEN

All-atom molecular dynamics simulations have been used to investigate the adsorption of low molecular weight hyaluronic acid to lipid membranes. We have determined the interactions that govern the adsorption of three different molecular weight hyaluronic acid molecules (0.4, 3.8 & 15.2 kDa) to lipid bilayers that are representative of the surface-active phospholipid bilayers found in synovial joints. We have found that both direct hydrogen bonds and water-mediated interactions with the lipid headgroups play a key role in the binding of hyaluronic acid to the lipid bilayer. The water-mediated interactions become increasingly important in stabilising the adsorbed hyaluronic acid molecules as the molecular weight of hyaluronic acid increases. We also observe a redistribution of ions around bound hyaluronic acid molecules and the associated lipid headgroups, and that the degree of redistribution increases with the molecular weight of hyaluronic acid. By comparing this behaviour to that observed in simulations of the charge-neutral polysaccharide dextran (MW ∼ 15 kDa), we show that this charge redistribution leads to an increased alignment of the lipid headgroups with the membrane normal, and therefore to more direct and water-mediated interactions between hyaluronic acid and the lipid membrane. These findings provide a detailed understanding of the general structure of hyaluronic acid-lipid complexes that have recently been presented experimentally, as well as a potential mechanism for their enhanced tribological properties.


Asunto(s)
Ácido Hialurónico/química , Membrana Dobles de Lípidos/química , Líquido Sinovial/química , Simulación de Dinámica Molecular , Estructura Molecular
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