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Nitric oxide plays an important role in several physiological processes. This study investigates model ruthenium ammine coordination compounds to control NO bioavailability: cis-[RuCl(NO)(NH3)4]+ (1+), cis-[RuCl(NO)(NH3)4]2+ (12+), cis-[RuCl(NO)(NH3)4]3+ (13+), trans-[RuCl(NO)(NH3)4]+ (2+), trans-[RuCl(NO)(NH3)4]2+ (22+), trans-[RuCl(NO)(NH3)4]3+ (23+), [Ru(NO)(NH3)5]+ (3+), [Ru(NO)(NH3)5]2+ (32+), and [Ru(NO)(NH3)5]3+ (33+). We employed natural population analysis (NPA) atomic charges (qNPA) and the LUMO to identify the main reduction sites in the complexes 1, 2 and 3. For example, in the transformations 12+ → 1+, 22+ → 2+, and 33+ → 32+, the main reduction site was a NO π* orbital, which accounted for the lower electron density of the Ru-NO bond critical point (BCP) in 1+, 2+, and 32+ than 12+, 22+, and 33+, respectively, as shown by the quantum theory of atoms in molecules (QTAIM). The QTAIM method indicated that the electron density was larger in Ru-NO BCP due to the Cl negative cis- and trans-influence in 12+ and 22+, respectively, as compared with the NH3 influence in 33+. Compared to trans-Cl-Ru-NO in 22+, the interacting quantum atoms method demonstrated that cis-Cl-Ru-NO in 12+ displayed (i) a larger repulsive electrostatic energy, which agreed with qNPA, and (ii) a less negative exchange-correlation energy between Ru and the NO nitrogen atom, which agreed with topological analyses performed by the QTAIM method. Thus, the combination of topological and energy decomposition analyses allowed the mechanism behind the Ru-NO bond to be revealed regarding the influence of the total charge and the relative position of the ligands.

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Two treatments of relativistic effects, namely effective core potentials (ECP) and all-electron scalar relativistic effects (DKH2), are used to obtain geometries and chemical reaction energies for a series of ruthenium complexes in B3LYP/def2-TZVP calculations. Specifically, the reaction energies of reduction (A-F), isomerization (G-I), and Cl- negative trans influence in relation to NH3 (J-L) are considered. The ECP and DKH2 approaches provided geometric parameters close to experimental data and the same ordering for energy changes of reactions A-L. From geometries optimized with ECP, the electronic energies are also determined by means of the same ECP and basis set combined with the computational methods: MP2, M06, BP86, and its derivatives, so as B2PLYP, LC-wPBE, and CCSD(T) (reference method). For reactions A-I, B2PLYP provides the best agreement with CCSD(T) results. Additionally, B3LYP gave the smallest error for the energies of reactions J-L. © 2017 Wiley Periodicals, Inc.

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In this article, triazolylidene-derived N-heterocyclic olefins (trNHOs) are designed using computational quantum tools, and their potential to promote CO2 sequestration is tested and discussed in detail. The low barrier heights related to the trNHO-mediated process indicate that the tailored compounds are very promising for fast CO2 sequestration. The systematic analysis of the presence of distinct substitutes at different N positions of the trNHO ring allows us to rationalize their effect on the carboxylation process and reveal the best N-substituted trNHO systems for CO2 sequestration and improved trNHO carboxylates for faster CO2 capture/release.

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TD-DFT and a combination of polarized continuum model (PCM) and microhydration methods helped to simulate the optical electronic absorption spectrum of ortho-aminobenzoic acid (o-Abz). The microhydration method involved the use of different numbers, from 1 to 5, of first solvation layer water molecules. We examined how implicit and explicit water affected the energies of the HOMO-LUMO transition in the o-Abz/water systems. Adding until five water molecules, the theoretical spectrum becomes closer to the experimental data. Microhydration combined with the PCM method leads to agreement between the theoretical result for five water molecules and the experimentally measured absorption bands.

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The spectral and energetic characteristics of four bi-chromophoric cyanine dyes (BCDs) which possess angles between chromophores 180 degrees , 150 degrees , 120 degrees and 90 degrees , were studied using quantum chemical calculations in comparison with experimental data. It was demonstrated that for BCD with 180 degrees , 150 degrees and 90 degrees trans-trans isomers possess the lowest energy, while for BCD with 120 degrees the trans-trans and cis-trans isomers have comparable energies and in the temperature range from 273K up to 373K both isomers of this dye are present. It was also demonstrated that the splitting of the spectra of cyanine dyes with two chromophores (BCD) was determined by two effects: the dipole-dipole chromophore interaction and the electron tunneling through the central heterocycle. Both effects depend on the central heterocycle structure, which on the one hand determines the distance between the chromophores, thus determining the value of the dipole-dipole interaction, and on the other hand the degree of pi-conjugation in the central heterocycle determines the probability of electron tunneling. The central heterocycle structure determines relative orientation of the chromophore dipoles, as well, thus determining the intensities of the short-wavelength and long-wavelength bands in the BCD absorption spectra.

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Complexes between formic acid or formate anion and various proton donors (HF, H(2)O, NH(3), and CH(4)) are studied by the MP2 and B3LYP methods with the 6-311++G(3df,3pd) basis set. Formation of a complex is characterized by electron-density transfer from electron donor to ligands. This transfer is much larger with the formate anion, for which it exceeds 0.1 e. Electron-density transfer from electron lone pairs of the electron donor is directed into sigma* antibonding orbitals of X--H bonds of the electron acceptor and leads to elongation of the bond and a red shift of the X--H stretching frequency (standard H-bonding). However, pronounced electron-density transfer from electron lone pairs of the electron donor also leads to reorganization of the electron density in the electron donor, which results in changes in geometry and vibrational frequency. These changes are largest for the C--H bonds of formic acid and formate anion, which do not participate in H-bonding. The resulting blue shift of this stretching frequency is substantial and amounts to almost 35 and 170 cm(-1), respectively.