RESUMEN
Most research on trinucleotide repeats (TRs) focuses on human diseases, with few on the impact of TR expansions on plant gene expression. This work investigates TRs' effect on global gene expression in Psidium guajava L., a plant species with widespread distribution and significant relevance in the food, pharmacology, and economics sectors. We analyzed TR-containing coding sequences in 1,107 transcripts from 2,256 genes across root, shoot, young leaf, old leaf, and flower bud tissues of the Brazilian guava cultivars Cortibel RM and Paluma. Structural analysis revealed TR sequences with small repeat numbers (5-9) starting with cytosine or guanine or containing these bases. Functional annotation indicated TR-containing genes' involvement in cellular structures and processes (especially cell membranes and signal recognition), stress response, and resistance. Gene expression analysis showed significant variation, with a subset of highly expressed genes in both cultivars. Differential expression highlighted numerous down-regulated genes in Cortibel RM tissues, but not in Paluma, suggesting interplay between tissues and cultivars. Among 72 differentially expressed genes with TRs, 24 form miRNAs, 13 encode transcription factors, and 11 are associated with transposable elements. In addition, a set of 20 SSR-annotated, transcribed, and differentially expressed genes with TRs was selected as phenotypic markers for Psidium guajava and, potentially for closely related species as well.
Asunto(s)
Regulación de la Expresión Génica de las Plantas , Repeticiones de Microsatélite , Psidium , Psidium/genética , Repeticiones de Microsatélite/genética , Repeticiones de Trinucleótidos/genética , Perfilación de la Expresión Génica , Hojas de la Planta/genética , Hojas de la Planta/metabolismo , Factores de Transcripción/genética , Factores de Transcripción/metabolismoRESUMEN
Understanding how plants cope with stress and the intricate mechanisms thereby used to adapt and survive environmental imbalances comprise one of the most powerful tools for modern agriculture. Interdisciplinary studies suggest that knowledge in how plants perceive, transduce and respond to abiotic stresses are a meaningful way to design engineered crops since the manipulation of basic characteristics leads to physiological remodeling for plant adaption to different environments. Herein, we discussed the main pathways involved in stress-sensing, signal transduction and plant adaption, highlighting biochemical, physiological and genetic events involved in abiotic stress responses. Finally, we have proposed a list of practice markers for studying plant responses to multiple stresses, highlighting how plant molecular biology, phenotyping and genetic engineering interconnect for creating superior crops.
RESUMEN
Acquiring high-quality RNA in sufficient amounts is crucial in plant molecular biology and genetic studies. Several methods for RNA extraction from plants are available in the literature, mainly due to the great biochemical diversity present in each species and tissue, which can complicate or prevent the extraction. Psidium guajava (Myrtaceae family) is a perennial fruit tree of medicinal and economic value; nevertheless, only a few molecular studies are available for the species. One reason is the difficulty in obtaining RNA due to the content of the samples, which are rich in polyphenols, polysaccharides, and secondary metabolites. Furthermore, there are few studies available for the isolation of RNA from guava or Psidium samples, which hampers advances in the study of the genus. Here, quality and yields of RNA isolates were compared using six extraction protocols: two protocols based on the application of cetyltrimethylammonium bromide (CTAB) lysis buffer, one protocol which uses the TRIzol reagent, one which applies guanidine thiocyanate lysis buffer followed by organic phase extraction, and two commercial kits (PureLink RNA Mini Kit and RNeasy Plant Mini Kit). The CTAB-based method provided the highest RNA yields and quality for five different tissues (flower bud, immature leaf, young leaf, mature leaf, and root), genotypes, and stress conditions. For the most efficient protocol, the average yield of RNA from guava leaves was 203.06 µg/g of tissue, and the A260/A280 and A260/A230 ratios were 2.1 and 2.2, respectively. RT-qPCR analysis demonstrated that the purity of the samples was sufficient for molecular biology experiments. CTAB-based methods for RNA isolation were found to be the most efficient, providing the highest RNA yields and quality for tissues from P. guajava. Additionally, they were compatible for downstream RNA-based applications, besides being simple and cost-effective.
Asunto(s)
Cetrimonio/química , Psidium/genética , ARN de Planta/aislamiento & purificación , Flores/genética , Genotipo , Guanidinas/química , Fenoles/química , Hojas de la Planta/genética , Raíces de Plantas/genética , Polifenoles/química , Polisacáridos/química , ARN de Planta/metabolismo , Reacción en Cadena en Tiempo Real de la PolimerasaRESUMEN
The rupture of Fundão Dam is considered one of the largest environmental disasters in Brazilian history and one of the largest in the world involving tailings dams. The present study analyzed the changes in metal concentrations in the dissolved, suspended particulate matter (SPM) and sediment in the period just after (15 days) and six months after the dam rupture, together with the biological and cytogenotoxic effects, from the collapse site until the Doce River mouth in the Atlantic Ocean. After the dam rupture, the tailings were mainly transported as SPM. After six months, with the deposition, there was a decrease in metal concentrations in dissolved and SPM and increased levels were observed in the sediment. Cr, Ni, Cd and Hg levels in sediment were higher than the threshold effects level (TEL/NOAA), especially six months after the dam rupture. The water induced immediate negative biological effects at different levels of the trophic chain, together with Al, Fe, Mn and Zn accumulation in fish muscle. Both water and sediment also showed cytotoxic, genotoxic and mutagenic effects. These data demonstrate the importance of long-term monitoring with abiotic and biotic parameters to clarify the impacts of mining tailings and can help to direct future monitoring programs.
Asunto(s)
Metales Pesados , Contaminantes Químicos del Agua , Animales , Océano Atlántico , Brasil , Monitoreo del Ambiente , Metales Pesados/análisis , Minería , Propanolaminas , Ríos , Contaminantes Químicos del Agua/análisis , Contaminantes Químicos del Agua/toxicidadRESUMEN
Effects of imidacloprid and iprodione, isolated and in mixture, were assessed by using seed germination and root growth test, flow cytometry, and chromosomal aberrations test on Allium cepa root meristem. The highest concentrations of imidacloprid, including field concentration, increased the frequency of sub-G1 particles, decreased the frequency of nuclei in G2/M, increased the coefficient of variation of G1 (CVG1) and the frequency of aberrant cells, and inhibited the mitotic index culminating in the reduction in root length. All doses of iprodione also presented cytogenotoxic action. The highest concentration of the fungicide affected the growth of A. cepa roots. In response to exposure to pesticide mixtures, the cell cycle of A. cepa was blocked in the G1 phase. The mixtures with low doses of the pesticides significantly decreased the mitotic index, and as a consequence, the genotoxicity was reduced. In the mixtures with the highest doses of the agrochemicals, the blockage of the cell cycle was insufficient for damage repair, resulting in a significant increase of chromosomal aberrations. The results suggest caution in the use of pesticides doses that induce cytological abnormalities in non-target organisms.