RESUMEN
The conformational stability and vibrational infrared and Raman spectra of chloroacetyl isocyanate (CH2ClCONCO) were investigated by ab initio MP2 and density functional B3LYP calculations using the 6-311 + + G** basis set. From the potential energy scans of the internal rotations of both the halomethyl and the isocyanate rotors, chloroacetyl isocyanate was predicted to exist predominantly in a mixture of the cis-cis (chlorine atom and NCO group eclipse C=O bond) and the gauche-cis (one hydrogen atom and NCO group eclipse C=O bond) conformations with a comparable relative stability. The vibrational wavenumbers of each of the two conformers of the molecule were computed at DFT-B3LYP/6-311 + + G** level. Normal coordinate calculations were carried out to obtain the potential energy distributions (PED) among the symmetry coordinates of the normal modes for each of the stable conformers of chloroacetyl isocyanate. The theoretical vibrational assignments are compared with experimental ones and a ratio of observed/calculated wavenumbers of about 0.97-1.04 was obtained.
Asunto(s)
Isocianatos/química , Isocianatos/análisis , Modelos Químicos , Modelos Teóricos , Programas Informáticos , Espectrometría RamanRESUMEN
The conformational behavior and structural stability of dichloro and difluoromethyl-sulfonyl isocyanates were investigated by quantum mechanical DFT and ab initio calculations. The 6-311 + + G** basis set was employed to include polarization and diffuse functions in the calculation at B3LYP and MP2 levels. The molecules were found to exist in a mixture of trans-gauche and gauche-gauche conformations at ambient temperatures. From the calculations the isocyanate NCO moiety was predicted to nearly eclipse one of the sulfony S=O bonds in the two stable conformers of both molecules. The potential scans for the rotations of the two NCO and CX2H rotors were calculated from which the rotational barriers could be estimated. The vibrational frequencies, potential energy distributions, IR intensities as well as depolarization ratios were calculated.
Asunto(s)
Isocianatos/análisis , Espectrofotometría Infrarroja/métodos , Isocianatos/química , Modelos Químicos , Oxígeno/química , Teoría Cuántica , Sulfonas/química , Azufre/química , TemperaturaRESUMEN
The conformational behavior and the structural stability of formyl fluoroketene, formyl chloroketene and formyl methylketene were investigated by utilizing quantum mechanical DFT calculations at B3LYP/6-31I + + G** and ab initio calculations at MP2/6-311 + + G** levels. The three molecules were predicted to have a planar s-cis<-->s-trans conformational equilibrium. From the calculations, the direction of the conformational equilibrium was found to be dependent on the nature of the substituting group. In formyl haloketenes, the cis conformation, where the C=O group eclipses the ketenic group, was expected to be of lower energy than the trans conformer. In the case of formyl methylketene the conformational stability was reversed and the trans form (the aldehydic hydrogen eclipsing the ketenic group) was calculated to be about 2 kcal mol(-1) lower in energy than the cis form. The calculated cis-trans energy barrier was found to be in the order: fluoride (15.3 kcal mol(-1)) > chloride (13.1 kcal mol(-1)) > methyl (11.7 kcal mol(-1). Full optimization was performed at the ground and the transition states of the molecules. The vibrational frequencies for the stable conformers of the three ketenic systems were computed at the DFT-B3LYP level, and the zero-point corrections were included into the calculated rotational barriers. Complete vibrational assignments were made on the basis of both normal coordinate calculations and comparison with experimental results of similar molecules.
Asunto(s)
Etilenos/química , Cetonas/química , Espectrofotometría/métodos , Carbono/química , Flúor/química , Cinética , Modelos Químicos , Espectrometría Raman/métodos , Estereoisomerismo , TermodinámicaRESUMEN
The conformational behavior and structural stability of 3,3-dichloropropanal and 3,3,3-trichloropropanal were investigated by ab initio calculations. The 6-311 + + G** basis set was employed to include polarization and diffuse functions in the calculations at B3LYP level. From the calculation, the trans conformer of 3,3,3-trichloropropanal was predicted to be the predominant conformer with about 2 kcal mol(-1) of energy lower than the cis form. Additionally, 3,3 dichloro-propanal was predicted to exist as a mixture of three stable conformers. The potential function scans were calculated for the two molecules from which the rotational barriers could be estimated. The vibrational frequencies were computed at B3LYP level and complete vibrational assignments were made based on normal coordinate calculations for the conformers of the two molecules. Vibrational Raman and infrared spectra of the mixture of the stable conformers were computed at 300 K.
Asunto(s)
Aldehídos/química , Espectrofotometría Infrarroja , Espectrometría Raman , Conformación Molecular , VibraciónRESUMEN
The possibility of the existence of solitary waves in DNA is investigated. On the basis of our classical model we do not find such a wave in a polynucleotide, but for a stack of adenine molecules without backbone we observe one. Possible extensions of the model for DNA are discussed. From our results we can conclude, that solitons exist in stacked systems without an additional backbone. At least the degree of freedom which couples a nucleotide base (pair) to the sugar-phosphate backbones (N-C stretching vibration) has to be treated with the help of the quantum equations of motion.