RESUMEN
New derivatives of pyrrolo[2,3-b]pyrazine were synthesized and tested on a panel of cultured human tumor cell lines. It was found that 6-amino-5-(3-chlorophenylamino)-7-(1-methyl-1H-benzo[d]imidazol-2-yl)-5H-pyrrolo[3,2-b]pyrazine-2,3-dicarbonitrile (4j) exhibited a significant antiproliferative activity: GI50 for cell lines RXF 393 (renal cancer) and BT-549 (breast cancer) were 14 and 82 nM, respectively. To identify possible molecular targets, docking of the most active compounds into the active sites of cyclin-dependent kinases was performed. Molecular modeling of the inhibitor-enzyme complexes showed the differences in the binding poses of new pyrrolo[2,3-b]pyrazine derivatives in the kinase ATP-binding site compared with known pyrrolo[2,3-b]pyrazine inhibitors called aloisines. The patterns of drug kinase interactions correlated well with antiproliferative activities of novel derivatives. Key interactions and binding mode of docked compounds are discussed.
Asunto(s)
Antineoplásicos/farmacología , Inhibidores de Proteínas Quinasas/farmacología , Pirazinas/farmacología , Antineoplásicos/química , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Humanos , Espectroscopía de Resonancia Magnética , Estructura Molecular , Inhibidores de Proteínas Quinasas/química , Pirazinas/química , Espectrofotometría InfrarrojaRESUMEN
The method is proposed for calculation of the most important parameters of the two-stage enzymatic or transport process--modification factors alpha and beta (which characterize the effector action mechanism) as well as the inhibition constant K(i) or activation constant K(a) (characterize the effector affinity for protein). The method was derived as based on the analysis of kinetic regularities of the action of reversible effectors (inhibitors and activators) on the catalytic (transport) activity of proteins. The method is based on the titration of enzymatic (transport) protein by the substrate with the absence and with presence of the effector taken in one of concentrations as well as determination (under the fixed substrate concentration) of the inhibition coefficient i(0.5) (in case of the inhibitor action) or the activation coefficient a(0.5) (in case of the activator action). Practical use of the method has been demonstrated on the example of reversible inhibition to eosine Y (2', 4', 5', 7' - tetrabromofluorescein) ofthe reaction of enzymatic hydrolysis of ATP catalyzed by highly purified transport Ca2+, Mg(2+)-ATPase isolated from the smooth-muscle sarcolemma. In this case the inhibitory effect is characterized by the following parameters: alpha = 6-8 > 1; beta = 0.50-0.53 < 1; inhibition constant K(i) = 10(-9) - 10(-8) M. Consequently, judging from the values of alpha and beta, the eosine Y effect on the analyzed Ca2+, Mg(2+)-dependent ATP-hydrolase enzymatic reaction is based on the mechanism of the mixed inhibition (one can observe the inhibition of the both stages of enzymatic transformation--the substrate binding with the enzyme and decomposition of "Michaelis complex" in the direction of formation of the reaction products). The inhibitor itself, in correspondence with K(ij) values is characterized by rather high affinity for Ca2+, Mg(2+)-ATPase. It is supposed that the proposed approach can be useful when identifying the type of the reversible effector action on the enzymatic (transport) activity of proteins, estimation of real affinity of the inhibitors and activators for the latter.
Asunto(s)
Activadores de Enzimas/química , Inhibidores Enzimáticos/química , Enzimas/química , Modelos Químicos , Cinética , TermodinámicaRESUMEN
It was demonstrated in experiments made on a fraction of plasma membranes of the uterine smooth muscle cells that PH-dependence of enzymatic activity of the "basal" (Ca(2+)-independent) Mg(2+)-ATPase obtained under the conditions of determining the initial velocity of ATP hydrolysate is not bell-shaped but is characterized by linearity in the range of the values of hydrogen index 6.0-8.0. A kinetic model of Mg(2+)-dependent enzymatic hydrolysis of ATP has been suggested and analyzed; the model explains the linearity of the above pH-dependence. Results of kinetic analysis prove that the cause of linear pH-dependence of enzymatic activity of the "basal" Mg(2+)-ATPase is that the proton H+ is a competitive inhibitor of the given enzyme: the increase of protons concentration leads to a decrease of the affinity of Mg(2+)-ATP substrate for the enzyme, but it has no effect on the number of circulations of the latter. Thus the work gives a kinetic substantiation of the possible regulatory role of protons H+ as the factor of original negative inverse relation which controls the enzymatic activity of the basal Mg(2+)-ATPase "producing" protons in the myometrium cells; the concentration of protons in the near-membrane regions of the myoplasma being increased the ATPase activity decreases, and the former being decreased the latter increases. It is not excluded that owing to its original linear pH-dependence the studied ATP-hydrolase system serves as an important element of the control of proton homeostasis in the smooth-muscle cells.