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Erosion-induced topsoil dilution strongly affects cropland biogeochemistry and is associated with a negative effect on soil health and crop productivity. While its impact on soil C cycling has been widely recognized, there is little information about its impact on soil N cycling and N fertilizer dynamics. Here, we studied three factors potentially influencing N cycling and N fertilizer dynamics in cropping systems, namely: 1.) soil type, 2.) erosion-induced topsoil dilution and 3.) N fertilizer form, in a full-factorial pot experiment using canola plants. We studied three erosion affected soil types (Luvisol, eroded Luvisol, calcaric Regosol) and performed topsoil dilution in all three soils by admixing 20 % of the respective subsoil into its topsoil. N fertilizer dynamics were investigated using either mineral (calcium ammonium nitrate) or organic (biogas digestate) fertilizer, labeled with 15N. The fertilizer 15N recovery and the distribution of the fertilizer N in different soil fractions was quantified after plant maturity. Fertilizer N dynamics and utilization were influenced by all three factors investigated. 15N recovery in the plant-soil system was higher and fertilizer N utilization was lower in the treatments with diluted topsoil than in the non-diluted controls. Similarly, plants of the organic fertilizer N treatments took up significantly less fertilizer N in comparison to mineral fertilizer treatments. Both topsoil dilution and organic fertilizer application promoted 15N recovery and N accumulation in the soil fractions, with strong differences between soil types. Our study reveals an innovative insight: topsoil dilution due to soil erosion has a negligible impact on N cycling and dynamics in the plant-soil system. The crucial factors influencing these processes are found to be the choice of fertilizer form and the specific soil type. Recognizing these aspects is essential for a precise and comprehensive assessment of the environmental continuum, emphasizing the novelty of our findings.

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Enhancing the agroecosystems carbon (C) sink function for climate mitigation faced challenges, particularly with traditional measures with limited suitability for increasing soil organic carbon (SOC) stocks. Inducing a SOC undersaturation in the topsoil by abrupt subsoil admixture is a way to create an additional C sink. However, the deep tillage traditionally used for this topsoil dilution was not always successful. It was due to a lack of knowledge and suitable approaches to record the effect of all relevant factors in SOC recovery, including soil conditions and fertilizer forms. We addressed these problems by establishing a three-factorial experiment: I) "moderate topsoil dilution," II) "N fertilization form," and III) "soil erosion state," representing three soil types in the hummocky ground moraine landscape of NE Germany. SOC dynamics were determined over a year of winter rye cropping using a novel robotic chamber system capable of measuring CO2 exchange on 36 experimental plots with a reduced methodological bias than previous measuring systems. The averaged net ecosystem carbon balance, a proxy for SOC stock change, indicated that topsoil dilution only reduced further SOC losses. The N fertilizer form had a significantly stronger and more differentiated effect. While the mineral N fertilization consistently produced only C sources, the organic fertilization, in combination with the diluted topsoil, led to a C sink. This C-sink function was, however, more pronounced in the eroded soil than in the non-eroded soil. Overall, the results have made clear that the impact of topsoil dilution on the further development of the SOC stock is only possible if the effect of other relevant factors, such as N fertilizer form and erosion state, are taken into account.

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Increased crop production is a main goal to feed the predicted human population in future. The current management practice is, however, not sustainable as it depends on high amounts of fertilizer application and is highly vulnerable to decreased soil water availability. At the same time it becomes more and more crucial to reduce or even mitigate anthropogenic greenhouse gas (GHG) emissions. A possible way to enable this, might be the increase of the soil C sequestration and thus the C sink function of arable lands. A recent and potentially more sustainable idea is the single time fertilization with amorphous silicon (ASi) which is known to increase both nutrient and water availability. Here we show for the first time on the basis of a field plot experiment how a fertilization with ASi is affecting both, crop yield and the C sequestration of the soils in an agricultural system cultivating wheat. We found a strong increase in wheat yield and biomass production after ASi fertilization by increasing soil moisture during the whole growing season. Additionally, despite a relatively short growing season, Si fertilization increased the net C uptake by soils, i.e., C sequestration with both Si fertilized treatments showing a negative net ecosystem C balance (soil C gain) during the measurement period, while the control showed a small positive net ecosystem C balance (soil C loss). To our best knowledge, this is the first time such effect has ever been observed. In summary, our study demonstrates a new management strategy for crop production increasing yield and biomass production as well as soil C uptake on a more sustainable basis, by a single time fertilization with ASi.

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Drainage and agricultural use transform natural peatlands from a net carbon (C) sink to a net C source. Rewetting of peatlands, despite of high methane (CH4 ) emissions, holds the potential to mitigate climate change by greatly reducing CO2 emissions. However, the time span for this transition is unknown because most studies are limited to a few years. Especially, nonpermanent open water areas often created after rewetting, are highly productive. Here, we present 14 consecutive years of CH4 flux measurements following rewetting of a formerly long-term drained peatland in the Peene valley. Measurements were made at two rewetted sites (non-inundated vs. inundated) using manual chambers. During the study period, significant differences in measured CH4 emissions occurred. In general, these differences overlapped with stages of ecosystem transition from a cultivated grassland to a polytrophic lake dominated by emergent helophytes, but could also be additionally explained by other variables. This transition started with a rapid vegetation shift from dying cultivated grasses to open water floating and submerged hydrophytes and significantly increased CH4 emissions. Since 2008, helophytes have gradually spread from the shoreline into the open water area, especially in drier years. This process was periodically delayed by exceptional inundation and eventually resulted in the inundated site being covered by emergent helophytes. While the period between 2009 and 2015 showed exceptionally high CH4 emissions, these decreased significantly after cattail and other emergent helophytes became dominant at the inundated site. Therefore, CH4 emissions declined only after 10 years of transition following rewetting, potentially reaching a new steady state. Overall, this study highlights the importance of an integrative approach to understand the shallow lakes CH4 biogeochemistry, encompassing the entire area with its mosaic of different vegetation forms. This should be ideally done through a study design including proper measurement site allocation as well as long-term measurements.

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Arctic soils are the largest pool of soil organic carbon worldwide. Temperatures in the Arctic have risen faster than the global average during the last decades, decreasing annual freezing days and increasing the number of freeze-thaw cycles (temperature oscillations passing through zero degrees) per year as the temperature is expected to fluctuate more around 0 °C. At the same time, proceeding deepening of seasonal thaw may increase silicon (Si) and calcium (Ca) concentrations in the active layer of Arctic soils as the concentrations in the thawing permafrost layer might be higher depending on location. We analyzed the importance of freeze-thaw cycles for Arctic soil CO2 fluxes. Furthermore, we tested how Si (mobilizing organic C) and Ca (immobilizing organic C) interfere with the soil CO2 fluxes in the context of freeze-thaw cycles. Our results show that with each freeze-thaw cycle the CO2 fluxes from the Arctic soils decreased. Our data revealed a considerable CO2 emission below 0 °C. We also show that pronounced differences emerge in Arctic soil CO2 fluxes with Si increasing and Ca decreasing CO2 fluxes. Furthermore, we show that both Si and Ca concentrations in Arctic soils are central controls on Arctic soil CO2 release, with Si increasing Arctic soil CO2 release especially when temperatures are just below 0 °C. Our findings could provide an important constraint on soil CO2 emissions upon soil thaw, as well as on the greenhouse gas budget of high latitudes. Thus we call for work improving understanding of freeze-thaw cycles as well as the effect of Ca and Si on carbon fluxes, as well as for increased consideration of those factors in wide-scale assessments of carbon fluxes in the high latitudes.

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Microorganisms acting as sinks for the greenhouse gas nitrous oxide (N2O) are gaining increasing attention in the development of strategies to control N2O emissions. Non-denitrifying N2O reducers are of particular interest because they can provide a real sink without contributing to N2O release. The bacterial strain under investigation (IGB 4-14T), isolated in a mesocosm experiment to study the litter decomposition of Phragmites australis (Cav.), is such an organism. It carries only a nos gene cluster with the sec-dependent Clade II nosZ and is able to consume significant amounts of N2O under anoxic conditions. However, consumption activity is considerably affected by the O2 level. The reduction of N2O was not associated with cell growth, suggesting that no energy is conserved by anaerobic respiration. Therefore, the N2O consumption of strain IGB 4-14T rather serves as an electron sink for metabolism to sustain viability during transient anoxia and/or to detoxify high N2O concentrations. Phylogenetic analysis of 16S rRNA gene similarity revealed that the strain belongs to the genus Flavobacterium. It shares a high similarity in the nos gene cluster composition and the amino acid similarity of the nosZ gene with various type strains of the genus. However, phylogenomic analysis and comparison of overall genome relatedness indices clearly demonstrated a novel species status of strain IGB 4-14T, with Flavobacterium lacus being the most closely related species. Various phenotypic differences supported a demarcation from this species. Based on these results, we proposed a novel species Flavobacterium azooxidireducens sp. nov. (type strain IGB 4-14T = LMG 29709T = DSM 103580T).

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The purpose of the StaPlaRes project was to evaluate two innovative techniques of urea fertiliser application and to quantify greenhouse gas (GHG) emissions. All GHG emissions, as well as other gaseous emissions, agronomic and environmental variables were collected for three years (2016/2017-2018/2019) at three experimental field sites in Germany. All management activities were consistently documented. Multi-variable data sets of gas fluxes (N2O and NH3), crop parameters (grain and straw yield, N content, etc.), soil characteristics (NH4-N, NO3-N, etc.), continuously recorded meteorological variables (air and soil temperatures, radiation, precipitation, etc.), management activities (sowing, harvest, soil tillage, fertilization, etc.), were documented and metadata (methods, further information about variables, etc.) described. Additionally, process-related tests were carried out using lab (N2 emissions), pot and lysimeter experiments (nitrate leaching). In total, 2.5 million records have been stored in a Microsoft Access database (StaPlaRes-DB-Thuenen). The database is freely available for (re)use by others (scientists, stakeholders, etc.) on the publication server and data repository OpenAgrar for meta-analyses, process modelling and other environmental studies.

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Denitrification is an ecosystem process linked to ongoing climate change, because it releases nitrous oxide (N2O) into the atmosphere. To date, the literature covers mostly how aboveground (i.e. plant community structure) and belowground (i.e. plant-associated soil microbes) biota separately influence denitrification in isolation of each other. We here present a mesocosm experiment where we combine a manipulation of belowground biota (i.e. addition of Rhizophagus irregularis propagules to the indigenous mycorrhizal community) with a realized gradient in plant diversity. We used a seed mix containing plant species representative of mesophytic European grasslands and by stochastic differences in species establishment across the sixteen replicates per treatment level a spontaneously established gradient in plant diversity. We address mycorrhizal-induced and plant-diversity mediated changes on denitrification potential parameters and how these differ from the existing literature that studies them independently of each other. We show that unlike denitrification potential, N2O potential emissions do not change with mycorrhiza and depend instead on realized plant diversity. By linking mycorrhizal ecology to an N-cycling process, we present a comprehensive assessment of terrestrial denitrification dynamics when diverse plants co-occur.

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Drainage has turned peatlands from a carbon sink into one of the world's largest greenhouse gas (GHG) sources from cultivated soils. We analyzed a unique data set (12 peatlands, 48 sites and 122 annual budgets) of mainly unpublished GHG emissions from grasslands on bog and fen peat as well as other soils rich in soil organic carbon (SOC) in Germany. Emissions and environmental variables were measured with identical methods. Site-averaged GHG budgets were surprisingly variable (29.2 ± 17.4 t CO2 -eq. ha-1  yr-1 ) and partially higher than all published data and the IPCC default emission factors for GHG inventories. Generally, CO2 (27.7 ± 17.3 t CO2  ha-1  yr-1 ) dominated the GHG budget. Nitrous oxide (2.3 ± 2.4 kg N2 O-N ha-1  yr-1 ) and methane emissions (30.8 ± 69.8 kg CH4 -C ha-1  yr-1 ) were lower than expected except for CH4 emissions from nutrient-poor acidic sites. At single peatlands, CO2 emissions clearly increased with deeper mean water table depth (WTD), but there was no general dependency of CO2 on WTD for the complete data set. Thus, regionalization of CO2 emissions by WTD only will remain uncertain. WTD dynamics explained some of the differences between peatlands as sites which became very dry during summer showed lower emissions. We introduced the aerated nitrogen stock (Nair ) as a variable combining soil nitrogen stocks with WTD. CO2 increased with Nair across peatlands. Soils with comparatively low SOC concentrations showed as high CO2 emissions as true peat soils because Nair was similar. N2 O emissions were controlled by the WTD dynamics and the nitrogen content of the topsoil. CH4 emissions can be well described by WTD and ponding duration during summer. Our results can help both to improve GHG emission reporting and to prioritize and plan emission reduction measures for peat and similar soils at different scales.

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In the context of studying the bacterial community involved in nitrogen transformation processes in arable soils exposed to different extents of erosion and sedimentation in a long-term experiment (CarboZALF), a strain was isolated that reduced nitrate to nitrous oxide without formation of molecular nitrogen. The presence of the functional gene nirK, encoding the respiratory copper-containing nitrite reductase, and the absence of the nitrous oxide reductase gene nosZ indicated a truncated denitrification pathway and that this bacterium may contribute significantly to the formation of the important greenhouse gas N2O. Phylogenetic analysis based on the 16S rRNA gene sequence and the housekeeping genes recA and atpD demonstrated that the investigated soil isolate belongs to the genus Rhizobium. The closest phylogenetic neighbours were the type strains of Rhizobium. subbaraonis and Rhizobium. halophytocola. The close relationship with R. subbaraonis was reflected by similarity analysis of the recA and atpD genes and their amino acid positions. DNA-DNA hybridization studies revealed genetic differences at the species level, which were substantiated by analysis of the whole-cell fatty acid profile and several distinct physiological characteristics. Based on these results, it was concluded that the soil isolate represents a novel species of the genus Rhizobium, for which the name Rhizobium azooxidifex sp. nov. (type strain Po 20/26T=DSM 100211T=LMG 28788T) is proposed.

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The identification of site-specific agricultural management practices in order to maximize yield while minimizing environmental nitrogen losses remains in the center of environmental pollution research. Here, we used the biogeochemical model LandscapeDNDC to explore different agricultural practices with regard to their potential to reduce soil N2O emissions and NO3 leaching while maintaining yields. In a first step, the model was tested against observations of N2O emissions, NO3 leaching, soil micrometeorology as well as crop growth for eight European cropland and grassland sites. Across sites, LandscapeDNDC predicts very well mean N2O emissions (r(2)=0.99) and simulates the magnitude and general temporal dynamics of soil inorganic nitrogen pools. For the assessment of site-specific mitigation potentials of environmental nitrogen losses a Monte Carlo optimization technique considering different agricultural management options (i.e., timing of planting, harvest and fertilization, amount of applied fertilizer as well as residue management) was used. The identified optimized field management practices reduce N2O emissions and NO3 leaching from croplands on average by 21% and 31%, respectively. Likewise, average reductions of 55% for N2O emissions and 16% for NO3 leaching are estimated for grasslands. For mitigating environmental loss - while maintaining yield levels - it was most important to reduce fertilizer application rates by in average 10%. Our analyses indicate that yield scaled N2O emissions and NO3 leaching indicate possible improvements of nitrogen use efficiencies in European farming systems. Moreover, the applied optimization approach can be used also in a prognostic way to predict optimal timings and fertilization options (rates and splitting) upon accurate weather forecasts combined with the knowledge of modeled soil nutrient availability and plant nitrogen demand.

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In the context of studying the influence of N-fertilization on N2 and N2O flux rates in relation to the soil bacterial community composition in fen peat grassland, a group of bacterial strains was isolated that performed dissimilatory nitrate reduction to ammonium and concomitantly produced N2O. The amount of nitrous oxide produced was influenced by the C/N ratio of the medium. The potential to generate nitrous oxide was increased by higher availability of nitrate-N. Phylogenetic analysis based on the 16S rRNA and the rpoB gene sequences demonstrated that the investigated isolates belong to the genus Proteus, showing high similarity with the respective type strains of Proteus vulgaris and Proteus penneri. DNA-DNA hybridization studies revealed differences at the species level. These differences were substantiated by MALDI-TOF MS analysis and several distinct physiological characteristics. On the basis of these results, it was concluded that the soil isolates represent a novel species for which the name Proteus terrae sp. nov. (type strain N5/687(T) =DSM 29910(T) =LMG 28659(T)) is proposed.

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Known as biogeochemical hotspots in landscapes, riparian buffer zones exhibit considerable potential concerning mitigation of groundwater contaminants such as nitrate, but may in return enhance the risk for indirect N2O emission. Here we aim to assess and to compare two riparian gray alder forests in terms of gaseous N2O and N2 fluxes and dissolved N2O, N2, and NO3(-) in the near-surface groundwater. We further determine for the first time isotopologue ratios of N2O dissolved in the riparian groundwater in order to support our assumption that it mainly originated from denitrification. The study sites, both situated in Estonia, northeastern Europe, receive contrasting N loads from adjacent uphill arable land. Whereas N2O emissions were rather small at both sites, average gaseous N2-to-N2O ratios inferred from closed-chamber measurements and He-O laboratory incubations were almost four times smaller for the heavily loaded site. In contrast, groundwater parameters were less variable among sites and between landscape positions. Campaign-based average (15)N site preferences of N2O (SP) in riparian groundwater ranged between 11 and 44 ‰. Besides the strong prevalence of N2 emission over N2O fluxes and the correlation pattern between isotopologue and water quality data, this comparatively large range highlights the importance of denitrification and N2O reduction in both riparian gray alder stands.

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In the course of studying the influence of N-fertilization on N(2) and N(2)O flux rates in relation to soil bacterial community composition of a long-term fertilization experiment in fen peat grassland, a strain group was isolated that was related to a strain isolated from a spacecraft assembly clean room during diversity studies of microorganisms, which withstood cleaning and bioburden reduction strategies. Both the fen soil isolates and the clean room strain revealed versatile physiological capacities in N-transformation processes by performing heterotrophic nitrification, respiratory ammonification and denitrification activity. Phylogenetic analysis based on 16S rRNA gene sequences demonstrated that the investigated isolates belonged to the genus Paenibacillus. Sequence similarities lower than 97% in comparison to established species indicated a separate species position. Except for the peptidoglycan type (A4alpha L-Lys-D-Asp), chemotaxonomic features of the isolates matched the genus description, but differences in several physiological characteristics separated them from related species and supported their novel species status. Despite a high 16S rRNA gene sequence similarity between the clean room isolate ES_MS17(T) and the representative fen soil isolate N3/975(T), DNA-DNA hybridization studies revealed genetic differences at the species level. These differences were substantiated by MALDI-TOF MS analysis, ribotyping and several distinct physiological characteristics. On the basis of these results, it was concluded that the fen soil isolates and the clean room isolate ES_MS17(T) represented two novel species for which the names Paenibacillus uliginis sp. nov. (type strain N3/975(T)=DSM 21861(T)=LMG 24790(T)) and Paenibacillus purispatii sp. nov. (type strain ES_MS17(T)=DSM 22991(T)=CIP 110057(T)) are proposed.

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Rewetting of drained fens is necessary to stop further soil degradation and to reestablish important ecological functions. However, substantial changes of peat characteristics in the upper soil layers, due to drainage and land use, could counteract their recovery as nutrient-poor systems for an unknown period. We assessed the importance of altered peat properties, such as the degree of peat decomposition and the amount of redox-sensitive phosphorus (P) compounds, for P mobilization in different degraded fens. An experimental design involving 63 intact peat cores from fens with varying drainage and land-use histories was developed to quantify the mobilization of P, as well as that of iron (Fe), ammonium, carbon dioxide, and methane, all indicators of organic-matter decomposition and/or P-releasing processes. We found that net P release rates in peat cores with highly decomposed peat (range: 0.1-52.3 mg P x m(-2) x d(-1)) were significantly correlated to the amount of P bound to redox-sensitive compounds and the molar Fe:P as well as Al:P ratios of peat. We conclude that the following general rules apply for P mobilization in rewetted fens: (1) elevated levels of P release rates and P concentrations in pore water up to three orders of magnitude larger than under natural reference conditions can only be expected for rewetted fens whose surface soil layers consist of highly decomposed peat; (2) peat characteristics, such as the amount of P bound to redox-sensitive Fe(III) compounds (positive correlation) and molar ratios of Fe:P or Al:P (negative correlations), explain the high range of P release rates; and (3) a critical P export to adjacent lakes or rivers can only be expected if molar Fe:P ratios of highly decomposed peat are less than 10.

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In 2001 and 2002, fluxes of N(2)O, CH(4), CO(2) and N(2) were measured in two constructed wetlands (CW) for domestic wastewater treatment in Estonia. The difference between the median values of N(2)O, CH(4), and N(2) fluxes in the horizontal subsurface flow (HSSF) CWs was non-significant, being 1.3-1.4 and 1.4-4.1 mg m(-2) d(-1) for N(2)O-N and CH(4)-C, and 0.16-0.17 g N m(-2) d(-1) for N(2)-N respectively. The CO(2)-C flux was significantly lower (0.6 g C m(-2) d(-1)) in one of the HSSF filters of a hybrid CW, whereas the single HSSF and VSSF filters emitted 1.7 and 2.0 g C m(-2) d(-1). The median value of CH(4)-C emission in CWs varied from 1.4 to 42.6 g C m(-2) d(-1), being significantly higher in the VSSF filter beds. We also estimated C and N budgets in one of the HSSF CWs (312.5 m(2)) for 2001 and 2002. The total C input into this system was similar in 2001 and 2002, 772 and 719 kg C year(-1), but was differently distributed between constituent fluxes. In 2001, the main input flux was soil and microbial accumulation (663 kg C year(-1) or 85.8% of total C input), followed by plant net primary production (NPP) (10.2%) and wastewater inflow (3.9%). In 2002, 55.7% of annual C input was bound in plant NPP, whereas the increase in soil C formed 28.5% and wastewater inflow 15.7%. The main C output flux was soil respiration, including microbial respiration from soil and litter, and the respiration of roots and rhizomes. It formed 120 (97.5%) and 230 kg C year(-1) (98.2%) in 2001 and 2002 respectively. The measured CH(4)-C flux remained below 0.1% of total C output. The HSSF CW was generally found to be a strong C sink, and its annual C sequestration was 649 and 484 kg C year(-1) per wetland in 2001 and 2002 respectively. However, negative soil and microbial accumulation values in recent years indicate decreasing C sequestration. The average annual N removal from the system was 38-59 kg N year(-1) (46-48% of the initial total N loading). The most important flux of the N budget was N(2)-N emission (22.7 kg in 2001 and 15.2 kg in 2002), followed by plant belowground assimilation (2.3 and 11.9 kg N year(-1) in 2001 and 2002), and above-ground assimilation (1.9 and 9.2 kg N year(-1), respectively). N(2)O emission was low: 0.37-0.60 kg N year(-1)(.).

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We measured nitrous oxide (N2O), dinitrogen (N2), and methane (CH4) fluxes in two constructed wetlands (CW) in Estonia using the closed chamber method and the He-O method in the period from October 2000 to March 2003. Emission rates of N2O-N, N2-N and CH4-C from both CWs varied significantly on a both spatial and temporal scale, ranging from 1 to 2,600, 170 to 130,000, and -1.7 to 87,200 microg m(-2) h(-1) respectively. The average flux of N2O from the microsites in the Kodijärve horizontal subsurface flow (HSSF) CW and Kõo hybrid CW ranged from 27 to 370 and from 72 to 500 microg N2O-N m(-2) h(-1), respectively, whereas the average dinitrogen flux from the microsites in the HSSF CW in Kodijärve was 2-3 magnitudes higher than the N2O flux, ranging from 19,500 to 33,300 microg N2-N m(-2) h(-1). The average methane emissions from the microsites in the Kodijärve HSSF CW and the Kõo hybrid CW ranged from 31 to 12,100 and from 950 to 5,750 microg CH4-C m(-2) h(-1), respectively. The highest emission values for all three gases were observed in the warm period. There was a significant relationship between emission rates and water table depth: CH4 and N2 emission increased and N2O emission decreased when the water table did rise. Although the emission of N2O and CH4 from CWs was found to be relatively high, their global warming potential (GWP) in the time horizon of 100 years is not significant, ranging from 4.5 to 16.3 tonnes of CO2 equivalents per ha per year in Kodijärve and from 12.1 to 17.3 t CO2 equivalents ha(-1) yr(-1) in Kõo.

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