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1.
Sci Adv ; 10(35): eadh7810, 2024 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-39196944

RESUMEN

Topological insulators are insulators in the bulk but feature chiral energy propagation along the boundary. This property is topological in nature and therefore robust to disorder. Originally discovered in electronic materials, topologically protected boundary transport has since been observed in many other physical systems. Thus, it is natural to ask whether this phenomenon finds relevance in a broader context. We choreograph a dance in which a group of humans, arranged on a square grid, behave as a topological insulator. The dance features unidirectional flow of movement through dancers on the lattice edge. This effect persists when people are removed from the dance floor. Our work extends the applicability of wave physics to dance.

2.
Adv Mater ; 36(30): e2402369, 2024 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-38794859

RESUMEN

Computational chemistry is an indispensable tool for understanding molecules and predicting chemical properties. However, traditional computational methods face significant challenges due to the difficulty of solving the Schrödinger equations and the increasing computational cost with the size of the molecular system. In response, there has been a surge of interest in leveraging artificial intelligence (AI) and machine learning (ML) techniques to in silico experiments. Integrating AI and ML into computational chemistry increases the scalability and speed of the exploration of chemical space. However, challenges remain, particularly regarding the reproducibility and transferability of ML models. This review highlights the evolution of ML in learning from, complementing, or replacing traditional computational chemistry for energy and property predictions. Starting from models trained entirely on numerical data, a journey set forth toward the ideal model incorporating or learning the physical laws of quantum mechanics. This paper also reviews existing computational methods and ML models and their intertwining, outlines a roadmap for future research, and identifies areas for improvement and innovation. Ultimately, the goal is to develop AI architectures capable of predicting accurate and transferable solutions to the Schrödinger equation, thereby revolutionizing in silico experiments within chemistry and materials science.

3.
J Chem Phys ; 156(19): 194308, 2022 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-35597658

RESUMEN

Confined electromagnetic modes strongly couple to collective excitations in ensembles of quantum emitters, producing light-matter hybrid states known as polaritons. Under such conditions, the discrete multilevel spectrum of molecular systems offers an appealing playground for exploring multiphoton processes. This work contrasts predictions from the Tavis-Cummings model in which the material is a collection of two-level systems, with the implications of considering additional energy levels with harmonic and anharmonic structures. We discuss the exact eigenspectrum, up to the second excitation manifold, of an arbitrary number N of oscillators collectively coupled to a single cavity mode in the rotating-wave approximation. Elaborating on our group-theoretic approach [New J. Phys. 23, 063081 (2021)], we simplify the brute-force diagonalization of N2 × N2 Hamiltonians to the eigendecomposition of, at most, 4 × 4 matrices for arbitrary N. We thoroughly discuss the eigenstates and the consequences of weak and strong anharmonicities. Furthermore, we find resonant conditions between bipolaritons and anharmonic transitions where two-photon absorption can be enhanced. Finally, we conclude that energy shifts in the polaritonic states induced by anharmonicities become negligible for large N. Thus, calculations with a single or few quantum emitters qualitatively fail to represent the nonlinear optical response of the collective strong coupling regime. Our work highlights the rich physics of multilevel anharmonic systems coupled to cavities absent in standard models of quantum optics. We also provide concise tabulated expressions for eigenfrequencies and transition amplitudes, which should serve as a reference for future spectroscopic studies of molecular polaritons.

4.
Nat Commun ; 13(1): 1645, 2022 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-35347131

RESUMEN

When molecular transitions strongly couple to photon modes, they form hybrid light-matter modes called polaritons. Collective vibrational strong coupling is a promising avenue for control of chemistry, but this can be deterred by the large number of quasi-degenerate dark modes. The macroscopic occupation of a single polariton mode by excitations, as observed in Bose-Einstein condensation, offers promise for overcoming this issue. Here we theoretically investigate the effect of vibrational polariton condensation on the kinetics of electron transfer processes. Compared with excitation with infrared laser sources, the vibrational polariton condensate changes the reaction yield significantly at room temperature due to additional channels with reduced activation barriers resulting from the large accumulation of energy in the lower polariton, and the many modes available for energy redistribution during the reaction. Our results offer tantalizing opportunities to use condensates for driving chemical reactions, kinetically bypassing usual constraints of fast intramolecular vibrational redistribution in condensed phase.

5.
FEMS Yeast Res ; 22(1)2022 02 23.
Artículo en Inglés | MEDLINE | ID: mdl-35084467

RESUMEN

Fructans are the main sugar in agave pine used by yeasts during mezcal fermentation processes, from which Candida apicola NRRL Y-50540 and Torulaspora delbrueckii NRRL Y-50541 were isolated. De novo transcriptome analysis was carried out to identify genes involved in the hydrolysis and assimilation of Agave fructans (AF). We identified a transcript annotated as SUC2, which is related to ß-fructofuranosidase activity, and several differential expressed genes involved in the transcriptional regulation of SUC2 such as: MIG1, MTH1, SNF1, SNF5, REG1, SSN6, SIP1, SIP2, SIP5, GPR1, RAS2, and PKA. Some of these genes were specifically expressed in some of the yeasts according to their fructans assimilation metabolism. Different hexose transporters that could be related to the assimilation of fructose and glucose were found in both the transcriptomes. Our findings provide a better understanding of AF assimilation in these yeasts and provide resources for further metabolic engineering and biotechnology applications.


Asunto(s)
Agave , Torulaspora , Fermentación , Fructanos/metabolismo , Perfilación de la Expresión Génica , Hidrólisis , Saccharomycetales , Torulaspora/metabolismo
6.
J Chem Phys ; 154(8): 084108, 2021 Feb 28.
Artículo en Inglés | MEDLINE | ID: mdl-33639750

RESUMEN

In vibrational strong coupling (VSC), molecular vibrations strongly interact with the modes of an optical cavity to form hybrid light-matter states known as vibrational polaritons. Experiments show that the kinetics of thermally activated chemical reactions can be modified by VSC. Transition-state theory, which assumes that internal thermalization is fast compared to reactive transitions, has been unable to explain the observed findings. Here, we carry out kinetic simulations to understand how dissipative processes, namely, those introduced by VSC to the chemical system, affect reactions where internal thermalization and reactive transitions occur on similar timescales. Using the Marcus-Levich-Jortner type of electron transfer as a model reaction, we show that such dissipation can change reactivity by accelerating internal thermalization, thereby suppressing nonequilibrium effects that occur in the reaction outside the cavity. This phenomenon is attributed mainly to cavity decay (i.e., photon leakage), but a supporting role is played by the relaxation between polaritons and dark states. When nonequilibrium effects are already suppressed in the bare reaction (the reactive species are essentially at internal thermal equilibrium throughout the reaction), we find that reactivity does not change significantly under VSC. Connections are made between our results and experimental observations.

7.
J Chem Phys ; 152(24): 244102, 2020 Jun 28.
Artículo en Inglés | MEDLINE | ID: mdl-32610984

RESUMEN

The increasing number of protein-based metamaterials demands reliable and efficient theoretical and computational methods to study the physicochemical properties they may display. In this regard, we develop a simulation strategy based on Molecular Dynamics (MD) that addresses the geometric degrees of freedom of an auxetic two-dimensional protein crystal. This model consists of a network of impenetrable rigid squares linked through massless rigid rods. Our MD methodology extends the well-known protocols SHAKE and RATTLE to include highly non-linear holonomic and non-holonomic constraints, with an emphasis on collision detection and response between anisotropic rigid bodies. The presented method enables the simulation of long-time dynamics with reasonably large time steps. The data extracted from the simulations allow the characterization of the dynamical correlations featured by the protein subunits, which show a persistent motional interdependence across the array. On the other hand, non-holonomic constraints (collisions between subunits) increase the number of inhomogeneous deformations of the network, thus driving it away from an isotropic response. Our work provides the first long-timescale simulation of the dynamics of protein crystals and offers insights into promising mechanical properties afforded by these materials.


Asunto(s)
Simulación de Dinámica Molecular , Proteínas/química
8.
J Chem Phys ; 152(16): 161101, 2020 Apr 30.
Artículo en Inglés | MEDLINE | ID: mdl-32357788

RESUMEN

A series of experiments demonstrates that strong light-matter coupling between vibrational excitations in isotropic solutions of molecules and resonant infrared optical microcavity modes leads to modified thermally activated kinetics. However, Galego et al. [Phys. Rev. X 9, 021057 (2019)] recently demonstrated that, within transition state theory, effects of strong light-matter coupling with reactive modes are mostly electrostatic and essentially independent of light-matter resonance or even of the formation of vibrational polaritons. To analyze this puzzling theoretical result in further detail, we revisit it under a new light, invoking a normal mode analysis of the transition state and reactant configurations for an ensemble of an arbitrary number of molecules in a cavity, obtaining simple analytical expressions that produce similar conclusions as Feist. While these effects become relevant in optical microcavities if the molecular dipoles are anisotropically aligned, or in cavities with extreme confinement of the photon modes, they become negligible for isotropic solutions in microcavities. It is concluded that further studies are necessary to track the origin of the experimentally observed kinetics.

9.
Chem Sci ; 11(45): 12371, 2020 Nov 09.
Artículo en Inglés | MEDLINE | ID: mdl-34094447

RESUMEN

[This corrects the article DOI: 10.1039/C8SC01043A.].

10.
Nat Commun ; 10(1): 4685, 2019 10 15.
Artículo en Inglés | MEDLINE | ID: mdl-31615990

RESUMEN

Interaction between light and matter results in new quantum states whose energetics can modify chemical kinetics. In the regime of ensemble vibrational strong coupling (VSC), a macroscopic number [Formula: see text] of molecular transitions couple to each resonant cavity mode, yielding two hybrid light-matter (polariton) modes and a reservoir of [Formula: see text] dark states whose chemical dynamics are essentially those of the bare molecules. This fact is seemingly in opposition to the recently reported modification of thermally activated ground electronic state reactions under VSC. Here we provide a VSC Marcus-Levich-Jortner electron transfer model that potentially addresses this paradox: although entropy favors the transit through dark-state channels, the chemical kinetics can be dictated by a few polaritonic channels with smaller activation energies. The effects of catalytic VSC are maximal at light-matter resonance, in agreement with experimental observations.

11.
Chem Sci ; 9(30): 6325-6339, 2018 Aug 14.
Artículo en Inglés | MEDLINE | ID: mdl-30310561

RESUMEN

Molecular polaritons are the optical excitations which emerge when molecular transitions interact strongly with confined electromagnetic fields. Increasing interest in the hybrid molecular-photonic materials that host these excitations stems from recent observations of their novel and tunable chemistry. Some of the remarkable functionalities exhibited by polaritons include the ability to induce long-range excitation energy transfer, enhance charge conductivity, and inhibit or accelerate chemical reactions. In this review, we explain the effective theories of molecular polaritons which form a basis for the interpretation and guidance of experiments at the strong coupling limit. The theoretical discussion is illustrated with the analysis of innovative applications of strongly coupled molecular-photonic systems to chemical phenomena of fundamental importance to future technologies.

12.
J Cutan Pathol ; 43(3): 258-62, 2016 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26347469

RESUMEN

Dabska tumor, also known as papillary intralymphatic angioendothelioma (PILA), is a locally aggressive hemangiendothelioma characterized by intravascular papillary proliferations of atypical endothelial cells. Besides PILA, papillary tufts lined by hobnail endothelial cells have been rarely described in vascular proliferations. We report two cases of acquired hemangiomas, which focally showed this finding. We present a 15-year-old male and a 7-year-old girl with erythematous nodules. Both lesions were composed of capillary lobules intermingled with large sinusoidal spaces lined with a single layer of flat endothelial cells, which focally developed intravascular papillary proliferations lined by plump hyperchromatic endothelial cells and a central connective tissue core. Both types of cells were positive with CD31 and ERG and negative for Lyve-1, Prox-1 and podoplanin. Wilm's tumor 1 marker was strongly positive in the capillary hemangioma areas while negative in the intravascular tufts. Both lesions recurred after the first excision but we did not observe further recurrence or evidence of metastasis in the follow-up. In summary, our cases expand the histopathologic findings that may be seen in conventional acquired capillary hemangiomas. The focal presence of dabskoid tufts within an otherwise conventional capillary hemangioma should be not misinterpreted as evidence of malignancy.


Asunto(s)
Biomarcadores de Tumor/metabolismo , Células Endoteliales , Hemangioma , Molécula-1 de Adhesión Celular Endotelial de Plaqueta/metabolismo , Neoplasias Cutáneas , Adolescente , Niño , Células Endoteliales/metabolismo , Células Endoteliales/patología , Femenino , Hemangioma/metabolismo , Hemangioma/patología , Humanos , Masculino , Neoplasias Cutáneas/metabolismo , Neoplasias Cutáneas/patología , Regulador Transcripcional ERG/metabolismo
14.
Genome Announc ; 3(4)2015 Jul 23.
Artículo en Inglés | MEDLINE | ID: mdl-26205871

RESUMEN

Torulaspora delbrueckii presents metabolic features interesting for biotechnological applications (in the dairy and wine industries). Recently, the T. delbrueckii CBS 1146 genome, which has been maintained under laboratory conditions since 1970, was published. Thus, a genome of a new mezcal yeast was sequenced and characterized and showed genetic differences and a higher genome assembly quality, offering a better reference genome.

15.
Genome Announc ; 3(3)2015 Jun 11.
Artículo en Inglés | MEDLINE | ID: mdl-26067948

RESUMEN

Candida apicola, a highly osmotolerant ascomycetes yeast, produces sophorolipids (biosurfactants), membrane fatty acids, and enzymes of biotechnological interest. The genome obtained has a high-quality draft for this species and can be used as a reference to perform further analyses, such as differential gene expression in yeast from Candida genera.

16.
J Cutan Pathol ; 39(10): 950-6, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22834950

RESUMEN

Benign lymphangioendothelioma is a rare locally infiltrative vascular neoplasm, presenting as a slow-growing, asymptomatic, reddish-violaceous plaque. Histopathologically, it is characterized by irregular and thin-walled vascular spaces, lined by a single and discontinuous layer of flat endothelial cells, dissecting dermal collagen bundles. We present the case of a 75-year-old man with a giant benign lymphangioendothelioma, to our knowledge, the largest example described in the literature. The immunohistochemical expression of Wilms tumor 1 gene is useful in vascular lesions to differentiate malformations from proliferative endothelial lesions. In our case, the positivity for WT1 supports the neoplastic nature of this lesion.


Asunto(s)
Linfangioma/patología , Neoplasias Cutáneas/patología , Anciano , Humanos , Inmunohistoquímica , Masculino
17.
Infect Agent Cancer ; 6(1): 10, 2011 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-21740585

RESUMEN

INTRODUCTION: There is a jaw cancer that develops in children five to eight years old in holoendemic malaria regions of Africa, associated to malaria and Epstein Barr virus infections (EBV). This malignancy is known as endemic Burkitt's lymphoma, and histopatologically is characterized by a starry sky appearance. To date, no histopathologic expression of Burkitt's lymphoma has been reported in non-genetically manipulated experimental animals. The purpose of the study is to describe the case of a mouse immune to Plasmodium yoelii yoelii (Pyy) that developed a Burkitt's lymphoma-like neoplasm after repeated malaria infections. RESULTS: Immune mouse 10 (IM-10) developed neoplasms at eight months of age, after receiving three Pyy inoculations. At autopsy eight subcutaneous tumors were found of which the right iliac fosse tumor perforated the abdominal wall and invaded the colon. The histopathologic study showed that all neoplasms were malignant lymphomas of large non-cleaved cells also compatible with variants or previous states of development of a Burkitt's lymphoma-like. The thymus, however, showed a typical starry sky Burkitt's lymphoma-like neoplasm. CONCLUSIONS: Neoplasm development in CD1 mouse is associated to both, immunity against malaria and continuous antigenic stimulation with living parasites.It is the first observation of a histopathologically expressed Human Burkitt's lymphoma-like neoplasm in a non-genetically manipulated mouse.Chronic immune response associated to neoplasms development could probably be not an exclusive expression of malaria-host interaction but, it could be a pattern that can bee applied also to other agent-host interactions such as host-bacteria, fungus, virus and other parasites.

18.
Clin Oral Implants Res ; 21(12): 1360-9, 2010 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-20637035

RESUMEN

OBJECTIVE: To evaluate the clinical performance of provisional screw-retained metal-free acrylic restorations in an immediate loading implant protocol. MATERIAL AND METHODS: Two hundred and forty-two consecutive patients were selected retrospectively, who received 1011 implants and 311 immediate provisional screw-retained implant restorations (2-4 h after implant surgery). The patients were monitored for a period of 2-3 months, until they were referred for a final restoration. The primary variables recorded include the survival time and the appearance of fractures in the provisional restoration, and the independent variables included age, sex, dental arch, type of restoration, type of attachment and components used, as well as cantilevers and opposing dentition. A survival analysis (Kaplan-Meier) and a Cox regression analysis were performed. RESULTS: Twenty-three restorations in 20 patients (8.26%, 95% CI 4.8-11.7) showed at least one fracture (7.39%). More than half of the new fractures (52%, 12 cases) occurred in the first 4 weeks. The cumulative survival probability observed was greater in mandible (P=0.05) and non-cantilever restorations (P=0.001), and in those opposed by full restorations or natural teeth (P=0.001). With an opposing implant-supported prosthesis, the risk of fracture was multiplied by 4.7, and the use of cantilevers as well as the location of the restoration in the maxilla multiply the risk by 3.4-3.5. CONCLUSIONS: Immediate provisional screw-retained metal-free implant-supported restorations can be considered a reliable restoration (92.6% remain intact) for the healing period of 3 months.


Asunto(s)
Resinas Acrílicas , Tornillos Óseos , Implantes Dentales , Retención de Prótesis Dentales/instrumentación , Prótesis Dental de Soporte Implantado , Restauración Dental Provisional , Adolescente , Adulto , Anciano , Anciano de 80 o más Años , Fracaso de la Restauración Dental , Análisis del Estrés Dental , Femenino , Humanos , Masculino , Persona de Mediana Edad , Modelos Dentales , Modelos de Riesgos Proporcionales , Resultado del Tratamiento
19.
J Am Acad Dermatol ; 61(4): 644-51, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19751882

RESUMEN

BACKGROUND: Cribriform carcinoma is the histopathologic variant of cutaneous apocrine carcinoma characterized by interconnected solid aggregations of neoplastic cells that are punctuated by small round spaces. OBJECTIVE: To describe the histopathologic and immunohistochemical characteristics of this under-recognized cutaneous adnexal neoplasm. METHODS: Twenty-six cases of primary cutaneous cribriform apocrine carcinoma were clinically, histopathologically, and immunohistochemically studied. RESULTS: Seven neoplasms arose in males and 19 in females. The median age of the patients was 47.8 years. The lower and upper limbs were the most frequent sites. Histopathologically, the neoplasms consisted of well-circumscribed dermal nodules composed of multiple, interconnected, solid aggregations of basophilic epithelial cells that were punctuated by small round spaces. Immunohistochemically, the neoplastic cells expressed immunoreactivity for MNF116, AE1/AE3, Cam 5.2, cytokeratin 7, carcinoembryonic antigen, and epithelial membrane antigen. LIMITATIONS: All specimens came from dermatopathology laboratories, and some inherent selection bias may exist. CONCLUSIONS: Primary cutaneous cribriform apocrine carcinoma is a distinctive but little-known variant of cutaneous apocrine carcinoma.


Asunto(s)
Adenocarcinoma/metabolismo , Adenocarcinoma/patología , Biomarcadores de Tumor/metabolismo , Neoplasias de Anexos y Apéndices de Piel/metabolismo , Neoplasias de Anexos y Apéndices de Piel/patología , Adulto , Anciano , Glándulas Apocrinas/patología , Biopsia , Carcinoma Adenoide Quístico/metabolismo , Carcinoma Adenoide Quístico/patología , Citoplasma/patología , Citoplasma/ultraestructura , Diagnóstico Diferencial , Células Epiteliales/patología , Células Epiteliales/ultraestructura , Femenino , Humanos , Inmunohistoquímica , Masculino , Microscopía Electrónica , Microvellosidades/patología , Microvellosidades/ultraestructura , Persona de Mediana Edad , Adulto Joven
20.
J Clin Periodontol ; 36(8): 650-60, 2009 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-19519874

RESUMEN

BACKGROUND: To evaluate the immediate efficacy in the reduction of dentine hypersensitivity (DH) when applying an 810 nm diode laser (DL), and a 10% potassium nitrate bioadhesive gel (NK10%). MATERIAL AND METHODS: Forty-five consecutive periodontal maintenance patients of both sexes, with a DH >or= 2 on the verbal rating scale (VRS) in one or more teeth, were randomly allocated into three equal groups: 15 patients received DL and placebo gel; 15 patients were tested with a placebo laser and NK10%; and the remaining 15 received a placebo laser and placebo gel. The DH was evaluated at the start of the study, 15 and 30 min. after the laser application, and on days 2, 4, 7, 14, 30 and 60 by a blind examiner. RESULTS: After 15 min., observations showed a reduction in DH after an evaporative stimulus (ES) of 36.9% (0.86), three times greater than that of the control group (0.23) (p=0.008). After 14 days, this effect was even greater [DL 71.7% (1.67)/NK10% 36.3% (1.73)/control 28.1% (0.73); p=0.004], and lasted until day 60 [65.7% (1.53)/30.4% (0.73)/25.8% (0.67); p=0.01]. CONCLUSIONS: The DL and NK10% gel were proven effective in the treatment of DH. A significantly greater immediate response was observed with DL.


Asunto(s)
Sensibilidad de la Dentina/prevención & control , Láseres de Semiconductores/uso terapéutico , Enfermedades Periodontales/prevención & control , Adulto , Anciano , Periodontitis Crónica/prevención & control , Sensibilidad de la Dentina/tratamiento farmacológico , Sensibilidad de la Dentina/radioterapia , Femenino , Estudios de Seguimiento , Geles , Recesión Gingival/prevención & control , Gingivitis/prevención & control , Humanos , Terapia por Luz de Baja Intensidad/métodos , Masculino , Persona de Mediana Edad , Nitratos/administración & dosificación , Nitratos/uso terapéutico , Periodontitis/prevención & control , Estimulación Física , Placebos , Compuestos de Potasio/administración & dosificación , Compuestos de Potasio/uso terapéutico , Factores de Tiempo , Tacto , Adulto Joven
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